Create transition network

Usage

rn_transition(
  phaseSequence,
  threshold = NA,
  doMatrixPlot = TRUE,
  doNetworkPlot = TRUE,
  excludeOther = FALSE,
  excludeNorec = TRUE,
  returnGraph = FALSE
)

Arguments

phaseSequence: A vector with names or numbers that represent a sequence of phases or order parameter dynamics. If a named numeric vector is passed, the names attribute will be used to represent the phases. If the variable phase_name, generated by rn_phases is used, the arguments excludeOther and excludeNorec wil be evaluated.
threshold: Provide a threshold for the relative frequencies. Values below the threshold will be set to 0. Pass NA to not use a threshold (default = NA)
doMatrixPlot: default(TRUE)
doNetworkPlot: default(TRUE)
excludeOther: Should the phase "Other" be excluded from plots? (default = FALSE)
excludeNorec: Should the category "No recurrence" be excluded from plots? (default = TRUE)
returnGraph: Return an igraph::igraph() object (default = FALSE)

Value

A transition matrix based on relative frequencies

Author

Fred Hasselman

Matti Heino

Examples


# This will output the transition matrix, a plot of the matrix and a transition network plot.
y <- c("Happy", "Happy", "Sad", "Neutral", "Neutral", "Angry", "Sad", "Sad", "Neutral")
TM <- rn_transition(y)