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Phase Series plot

Source: R/plotFUN.R
plotRN_phaseTimeSeries.Rd

Plot the sequence of phases as a time series.

Usage

plotRN_phaseTimeSeries(
  phaseOutput,
  showEpochLegend = TRUE,
  epochColours = NULL,
  epochLabel = "Phase",
  excludeVars = "",
  excludePhases = "",
  returnGraph = FALSE
)

Arguments

phaseOutput

Output from function rn_phaseInfo

excludeVars

Exclude specific dimension variables by name. Leave empty to include all variables (default = "")

excludePhases

Exclude Phases by their name (variable phase_name). Leave empty to include all Phases (after the other exclusion arguments) (default = "")

Value

phase density plot

Examples


RN <- rn(y1 = rnorm(100), weighted = TRUE)
#> Set `weightedBy` to 'si' due to the value of `weighted`
phase_out <- rn_phaseInfo(RN)
#> 
#> ~~~o~~o~~casnet~~o~~o~~~
#> 
#> Recurring states with high similarity will be considered a phase:
#> 
#> selectionMethod = degree
#> maxPhases = 100
#> minStatesinPhase = 2
#> maxStatesinPhase = 100
#> inverseWeight = TRUE
#> 
#> Recurring states will be grouped as a 'Phase ##', as transients (unstable phases) 'Transient ##', phase neighbours (state connects to more than 1 identified phase) 'PhaseNH ##', singularities (state recurs less often than minStatesinPhase) 'Singularity', or as not recurring 'Nonrecurring'.
#> 
#> ~~~o~~o~~casnet~~o~~o~~~
#> 
#> Found 11 phases with at least 2 states.
plotRN_phaseTimeSeries(phase_out)