Plot Phase Space Projection

Source: R/plotFUN.R

2D umap projection of multidimensional Phase Space. Categories "No recurrence" and "Other" are removed.

plotRN_phaseProjection(
  RNdist,
  phaseOutput,
  epochColours = NULL,
  showEpochLegend = TRUE,
  epochLabel = "Phase",
  excludeOther = TRUE,
  excludeNorec = TRUE
)

Arguments

RNdist

A distance matrix (unthresholded) created with rn or rp

phaseOutput

Output from function rn_phases

excludeOther

Exclude the default Phase "Other"

excludeNorec

Exclude the default Phase "No recurrence"

PhaseOut

Output from function rn_phases based on the thresholded matrix in RNdist

Value

Dataframe with coordinates