2D umap projection of multidimensional Phase Space. Categories "No recurrence" and "Other" are removed.
Usage
plotRN_phaseProjection(
RNdist,
phaseOutput,
epochColours = NULL,
showEpochLegend = TRUE,
epochLabel = "Phase",
excludeOther = TRUE,
excludeNorec = TRUE
)
Arguments
- RNdist
A distance matrix (unthresholded) created with rn or rp
- phaseOutput
Output from function rn_phases
- excludeOther
Exclude the default Phase "Other"
- excludeNorec
Exclude the default Phase "No recurrence"
- PhaseOut
Output from function rn_phases based on the thresholded matrix in RNdist
Value
Dataframe with coordinates
