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Profile Plot

Source: R/plotFUN.R
plotRN_phaseProfile.Rd

Plot a profile (values of the dimensions) for each phase.

Usage

plotRN_phaseProfile(
  phaseOutput,
  plotCentroid = NA,
  showEpochLegend = TRUE,
  epochColours = NULL,
  epochLabel = "Phase",
  excludeOther = FALSE,
  excludeNorec = TRUE,
  excludeVars = "",
  excludePhases = "",
  returnGraph = FALSE,
  colOrder = NA
)

Arguments

phaseOutput

Output from function rn_phases

excludeOther

Exclude the default Phase "Other"

excludeNorec

Exclude the default Phase "No recurrence"

excludeVars

Exclude specific dimension variables by name. Leave empty to include all variables (default = "")

excludePhases

Exclude Phases by their name (variable phase_name). Leave empty to include all Phases (after excludeOther and excludeNorec) (default = "")

Value

plot

Examples


RN <- rn(y1 = data.frame(x = rnorm(100), y= rnorm(100)), weighted = TRUE)
#> Set `weightedBy` to 'si' due to the value of `weighted`
phase_out <- rn_phases(RN, returnCentroid = "mean.sd")
#> This function uses an old version of the phase search algorithm...
#> Use rn_phaseInfo(), the new algorithm will produce different results!
#> 
#> Found 9 phases with at least 2 states.
#> Warning: no non-missing arguments to max; returning -Inf
#> Warning: no non-missing arguments to max; returning -Inf
#> Error in data.frame(phase_name = p, Mean = colMeans(tmp[, -NCOL(tmp)],     na.rm = TRUE)): arguments imply differing number of rows: 1, 0
plotRN_phaseProfile(phaseOutput = phase_out)
#> Error: object 'phase_out' not found